File:Gaussian 2d surface.png

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Summary

Description
English: Created in Python with Numpy and Matplotlib.
Date
Source Own work
Author Kopak999
PNG genesis
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This plot was created with Matplotlib
Source code
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Python code

import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
from matplotlib import cm

exp = np.exp

def Gaussian2D(X, Y, a=1,):
    """
    This function takes meshgrids of X- and Y-values and outputs an array of 
    Z-values in the shape of the Gaussian distribution:
    
    exp(-a(X^2 + Y^2)).
    """
    
    return exp(-a*(X**2 + Y**2))


def plotGaussianSurface(
    X, Y, Z,
    colormap=cm.cividis,  
    title="", 
    filetype="png", 
    saveflag=False, 
    resolution=200, 
    dpi=300,
    numticks_xy=7,
    numticks_z=2,
    numticks_xy_minor=25,
    numticks_z_minor=5,
):
    """
    Plots a 3D-surface of a 2D-Gaussian function.
    
    X, Y: Meshgrids of x- and y-values for the Gaussian.
    
    Z: The output of the Gaussian function.
    
    colormap: The colormap for the surface, mapped to the Z-values of the 
        graph.
    
    title: Title of the graph.
    
    filetype: Three-letter extension of the image filetype for saving the 
        graph. Default is png.
    
    saveflag: Boolean flag to check if the graph should be saved to a file.
        Set to True if you want to save the graph to a file. Default is False.
    
    resolution: Number of pixels to render along the x- and y-axes.
        Default is 200, which gives a 200x200 grid.
    
    dpi: Dots-per-inch of the image. Default is 300.
    """
    
    plt.ioff()
    
    # Set up kwargs:
    limit = int(np.ceil(np.amax(X)))
    zmin = int(np.floor(np.amin(Z)))
    zmax = int(np.ceil(np.amax(Z)))
    norm = mpl.colors.Normalize(vmin=zmin, vmax=zmax)
    aspect = (limit*2 + 1, limit*2 + 1, zmax)
    
    xy_major_params = dict(
        direction = "in",
    )
    xy_minor_params = dict(
        direction = "in",
        which = "minor",
    )
    xy_major_ticks = dict(
        ticks = np.linspace(-limit, limit, numticks_xy, endpoint=True,),
    )
    xy_minor_ticks = dict(
        ticks = np.linspace(-limit, limit, numticks_xy_minor, endpoint=True,), 
        minor = True,
    )
    z_major_params = dict(
        which = "major", 
        labelbottom = True, 
        labeltop = False,
    )
    z_minor_params = dict(
        which = "minor",
    )
    z_major_ticks = dict(
        ticks = np.linspace(0, zmax, numticks_z, endpoint=True,),
    )
    z_minor_ticks = dict(
        ticks = np.linspace(0, zmax, numticks_z_minor, endpoint=True,), 
        minor = True,
    )
    
    tick_labelsize = 7
    
    
    fig = plt.figure(dpi=dpi)
    ax = fig.add_subplot(1, 1, 1, projection ='3d')
    
    # Plot the surface
    surf = ax.plot_surface(
        X, Y, Z, 
        cmap = colormap, 
        linewidth=0, 
        antialiased=False, 
        vmin = zmin, vmax = zmax, 
        rcount = resolution, 
        ccount = resolution,
        norm = norm,
    )
    
    # Customize the z axis.
    ax.set_zlim(zmin, zmax)
    # ax.zaxis.set_major_locator(LinearLocator(10))
    ax.zaxis.set_major_formatter('{x:.1f}')
    
    
    ax.set_title(
        title, 
        fontdict = dict(verticalalignment = "bottom"),
    )
    
    ax.set_box_aspect(aspect)
    # ax.proj_type("ortho")
    ax.set_facecolor('none')
    
    # Set tick parameters
    ax.xaxis.set_tick_params(**xy_major_params)
    ax.xaxis.set_tick_params(**xy_minor_params)
    ax.yaxis.set_tick_params(**xy_major_params)
    ax.yaxis.set_tick_params(**xy_minor_params)
    ax.zaxis.set_tick_params(**z_major_params)
    ax.zaxis.set_tick_params(**z_minor_params)
    ax.set_xticks(**xy_major_ticks)
    ax.set_xticks(**xy_minor_ticks)
    ax.set_yticks(**xy_major_ticks)
    ax.set_yticks(**xy_minor_ticks)
    ax.set_zticks(**z_major_ticks)
    ax.set_zticks(**z_minor_ticks)
    ax.tick_params(labelsize=tick_labelsize)
    
    cbar = fig.colorbar(
        surf, 
        ax=ax, 
        orientation='vertical', 
        shrink=0.5, 
        aspect=12,
        pad = 0.10,
    )
    
    cbar.ax.tick_params(labelsize=tick_labelsize)
    
    if saveflag:
        savePlot(colormap, filetype)
    
    plt.tight_layout()
    
    plt.show()

x = y = np.linspace(-3, 3, 2**10, endpoint=True)
X, Y = np.meshgrid(x, y)

plotargs = dict(
    saveflag = False,
    dpi = 400,
    resolution = 200,
    numticks_xy=7, 
    numticks_xy_minor=25, 
    numticks_z=2, 
    numticks_z_minor=5,
)

plotGaussianSurface(X, Y, Gaussian2D(X, Y), **plotargs,)

Licensing

I, the copyright holder of this work, hereby publish it under the following licence:
w:en:Creative Commons
attribution share alike
This file is licensed under the Creative Commons Attribution-Share Alike 4.0 International licence.
You are free:
  • to share – to copy, distribute and transmit the work
  • to remix – to adapt the work
Under the following conditions:
  • attribution – You must give appropriate credit, provide a link to the licence, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
  • share alike – If you remix, transform, or build upon the material, you must distribute your contributions under the same or compatible licence as the original.

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3d plot of a Gaussian function with a two-dimensional domain.

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16 December 2020

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